NeuroScience Decoded
NeuroScience Decoded

A plain-language encyclopedia of the brain — history and pioneers, neurons and synapses, brain chemistry and anatomy, senses, memory, emotion, sleep and consciousness, disorders and treatments, brain-computer interfaces and AI. Every entry with a plain-English summary, everyday examples and links to the concepts you need first.

Brain Anatomy Intermediate

The Brainstem

The Editors June 3, 2026 2 min read
The Brainstem

Medulla, pons and midbrain: the compact stalk that keeps you breathing, keeps your heart beating, wakes you up and carries every message between brain and body.

In plain English

The brainstem connects the brain to the spinal cord. It controls automatic life functions like breathing and heart rate, contains the centres for waking and sleeping, and is the route for all signals between the brain and body.

Intermediate level: Builds on the basics. Introduces the real vocabulary and the mechanisms behind it.

Concepts to know first

The brainstem is a stalk about the length of a thumb connecting the forebrain to the spinal cord. It has three parts, from bottom to top: the medulla oblongata, the pons and the midbrain.

The medulla: vital functions

The medulla contains centres that control breathing, heart rate and blood pressure, as well as reflexes such as swallowing, coughing, sneezing and vomiting. Here the major motor pathways from the cortex cross to the opposite side (the pyramidal decussation) — which is why the left side of the brain controls the right side of the body.

The pons: a bridge

The pons ("bridge") relays signals between the cerebrum and the cerebellum, helps control breathing rhythm, and contains nuclei for facial sensation and movement, hearing and balance. The locus coeruleus, the brain's main source of noradrenaline, sits here, and regions in the pons help generate REM sleep and its muscle paralysis.

The midbrain

The midbrain contains reflex centres for vision and hearing (the superior and inferior colliculi, which turn your eyes and head toward sudden lights and sounds), the substantia nigra and ventral tegmental area (sources of dopamine), and the periaqueductal grey, which controls defensive behaviour and helps suppress pain.

The reticular formation: staying awake

Running through the core of the brainstem is the reticular formation, a network of neurons whose ascending projections (the "ascending reticular activating system") keep the cortex awake and alert. Damage here can cause coma.

Cranial nerves and serious damage

Ten of the twelve pairs of cranial nerves connect to the brainstem, controlling eye movements, facial expression, hearing, swallowing and speech. Because so much passes through a small space, brainstem strokes can be devastating. In locked-in syndrome, damage to the front of the pons paralyses nearly the whole body while consciousness is intact; patients may communicate only with eye movements.

Make it simple

Everyday examples & things to try

Real world

The Diving Bell and the Butterfly

The French magazine editor Jean-Dominique Bauby had a brainstem stroke in 1995 and developed locked-in syndrome. He wrote a whole memoir by blinking his left eyelid as an assistant recited the alphabet — a powerful illustration of how the brainstem carries the brain's commands, while the mind itself can remain intact.

Key takeaways

  • The brainstem (medulla, pons, midbrain) controls breathing, heart rate and other vital reflexes.
  • Its reticular formation keeps the cortex awake; damage can cause coma.
  • Most cranial nerves connect here; damage can cause locked-in syndrome.
Explore further

Search YouTube for…

Tap a phrase to copy it, then paste it into YouTube's search box. This site doesn't link to other websites — pick channels from universities, hospitals and established science educators.

Tagsanatomybrainstembreathingarousal

Keep reading